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Item type:Publication, A novel algorithm for detection of tuberculosis bacilli in sputum smear fluorescence images(Institute of Advanced Engineering and Scienceinfo@iaesjournal.com, 2020-12-01)This work proposes an algorithm aimed at recognizing and accounting Koch bacilli in digital images of microbiological sputum samples stained with auramine, in order to determine the degree of concentration and the state of the disease (tuberculosis). The algorithm was developed with the main objective of maximizing the sensitivity and specificity of the analysis of microbiological samples (recognition and counting of bacilli) according to each preparation method (direct and diluted pellets) in order to reduce the subjectivity of the visual inspection applied by the specialist at the time of analyzing the samples. The proposed algorithm consists of a background removal, an image improvement stage based on consecutive morphological closing operations, a segmentation stage of objects of interest based on thresholdization and a classification stage based on SVM. Each algorithmic stage was developed taking into account the method of preparation of the sample to be processed, being this aspect the main contribution of the proposed work, since it was possible to achieve very satisfactory results in terms of specificity and sensitivity. In this context, sensitivity levels of 91.24% and 93.79% were obtained. Specificity levels of 90.33% and 94.85% were also achieved for direct and diluted pellet methods respectively.5 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Total attenuation compensation for backscatter coefficient estimation using full angular spatial compounding(Elsevier, 2021-07-01)The backscatter coefficient (BSC) quantifies the frequency-dependent reflectivity of tissues. Accurate estimation of the BSC is only possible with the knowledge of the attenuation coefficient slope (ACS) of the tissues under examination. In this study, the use of attenuation maps constructed using full angular spatial compounding (FASC) is proposed for attenuation compensation when imaging integrated BSCs. Experimental validation of the proposed approach was obtained using two cylindrical physical phantoms with off-centered inclusions having different ACS and BSC values than the background, and in a phantom containing an ex vivo chicken breast sample embedded in an agar matrix. With the phantom data, three different ACS maps were employed for attenuation compensation: (1) a ground truth ACS map constructed using insertion loss techniques, (2) the estimated ACS map using FASC attenuation imaging, and (3) a uniform ACS map with a value of 0.5 dBcm\protect \relax \special {t4ht=−}1MHz\protect \relax \special {t4ht=−}1, which is commonly used to represent attenuation in soft tissues. Comparable results were obtained when using the ground truth and FASC-estimated ACS maps in term of inclusion detectability and estimation accuracy, with averaged fractional error below 2.8 dB in both phantoms. Conversely, the use of the homogeneous ACS map resulted in higher levels of fractional error (>10 dB), which demonstrates the importance of an accurate attenuation compensation. The results with the ex vivo tissue sample were consistent with the observations using the physical phantoms, with the FASC-derived ACS map providing comparable BSC images to those formed using the ground truth ACS map and more accurate than those BSC images formed using a uniform ACS. These results suggest that BSCs can be reliably estimated using FASC when a self-consistent attenuation compensation stemming from prior estimation of an accurate ACS map is used.5 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Viscoelastic characterization of in vivo human dermis using high-frequency ultrasonic crawling wave elastography(Institute of Electrical and Electronics Engineers Inc., 2022-01-01)High-frequency (center frequency of 18MHz) ultrasound was combined with crawling wave elastography to characterize skin viscoelastic properties in two anatomical sites (i.e., thigh and forearm) in humans in the range of 200-400 Hz. The Voigt model was used to obtain shear elasticity and shear viscosity estimates. The forearm's mean shear elasticity and shear viscosity were 6 kPa and 5.5 Pa.s, respectively, exhibiting significantly higher values than in the thigh (3.4 kPa and 3.2 Pa.s, respectively, p < 0.05). These results suggest that skin viscoelastic properties can be estimated in vivo using high-frequency crawling wave elastography and show translation potential for future application in the clinical screening of skin disorders. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, US backscatter for liver fat quantification: an AIUM-RSNA QIBA pulse-echo quantitative ultrasound initiative(NLM (Medline), 2022-12-01)Nonalcoholic fatty liver disease (NAFLD) is believed to affect one-third of American adults. Noninvasive methods that enable detection and monitoring of NAFLD have the potential for great public health benefits. Because of its low cost, portability, and noninvasiveness, US is an attractive alternative to both biopsy and MRI in the assessment of liver steatosis. NAFLD is qualitatively associated with enhanced B-mode US echogenicity, but visual measures of B-mode echogenicity are negatively affected by interobserver variability. Alternatively, quantitative backscatter parameters, including the hepatorenal index and backscatter coefficient, are being investigated with the goal of improving US-based characterization of NAFLD. The American Institute of Ultrasound in Medicine and Radiological Society of North America Quantitative Imaging Biomarkers Alliance are working to standardize US acquisition protocols and data analysis methods to improve the diagnostic performance of the backscatter coefficient in liver fat assessment. This review article explains the science and clinical evidence underlying backscatter for liver fat assessment. Recommendations for data collection are discussed, with the aim of minimizing potential confounding effects associated with technical and biologic variables. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Enhancing ultrasonic attenuation images through multi-frequency coupling with total nuclear variation(Acoustical Society of America, 2024-10-01)Quantitative ultrasound is a non-invasive image modality that numerically characterizes tissues for medical diagnosis using acoustical parameters, such as the attenuation coefficient slope. A previous study introduced the total variation spectral log difference (TVSLD) method, which denoises spectral log ratios on a single-channel basis without inter-channel coupling. Therefore, this work proposes a multi-frequency joint framework by coupling information across frequency channels exploiting structural similarities among the spectral ratios to increase the quality of the attenuation images. A modification based on the total nuclear variation (TNV) was considered. Metrics were compared to the TVSLD method with simulated and experimental phantoms and two samples of fibroadenoma in vivo breast tissue. The TNV demonstrated superior performance, yielding enhanced attenuation coefficient slope maps with fewer artifacts at boundaries and a stable error. In terms of the contrast-to-noise ratio enhancement, the TNV approach obtained an average percentage improvement of 34% in simulation, 38% in the experimental phantom, and 89% in two in vivo breast tissue samples compared to TVSLD, showing potential to enhance visual clarity and depiction of attenuation images.1 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Simultaneous Imaging of Ultrasonic Relative Backscatter and Attenuation Coefficients for Quantitative Liver Steatosis Assessment(Nature Research, 2023-12-01)Prevalence of liver disease is continuously increasing and nonalcoholic fatty liver disease (NAFLD) is the most common etiology. We present an approach to detect the progression of liver steatosis based on quantitative ultrasound (QUS) imaging. This study was performed on a group of 55 rats that were subjected to a control or methionine and choline deficient (MCD) diet known to induce NAFLD. Ultrasound (US) measurements were performed at 2 and 6 weeks. Thereafter, animals were humanely euthanized and livers excised for histological analysis. Relative backscatter and attenuation coefficients were simultaneously estimated from the US data and envelope signal-to-noise ratio was calculated to train a regression model for: (1) fat fraction percentage estimation and (2) performing classification according to Brunt’s criteria in grades (0 <5%; 1, 5–33%; 2, >33–66%; 3, >66%) of liver steatosis. The trained regression model achieved an R2 of 0.97 (p-value < 0.01) and a RMSE of 3.64. Moreover, the classification task reached an accuracy of 94.55%. Our results suggest that in vivo QUS is a promising noninvasive imaging modality for the early assessment of NAFLD.2